[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,609 items for (author: liu & j)

EMDB-60628:
Carazolol-activated human beta3 adrenergic receptor
Method: single particle / : Zheng S, Zhang S, Dai S, Chen K, Gao K, Lin B, Liu X

EMDB-60629:
Epinephrine-activated human beta3 adrenergic receptor
Method: single particle / : Zheng S, Zhang S, Dai S, Chen K, Gao K, Lin B, Liu X

EMDB-38328:
Cryo-EM structure of human GPR1 bound to chemerin
Method: single particle / : Liu AJ, Liu YZ, Ye RD

EMDB-60099:
SARS-CoV-2 spike trimer (6P) in complex with two R1-26 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60100:
SARS-CoV-2 spike trimer (6P) in complex with three R1-26 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60101:
SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, head-to-head aggregate
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60102:
SARS-CoV-2 spike trimer (6P) in complex with R1-26 Fab, focused refinement of RBD-Fab region
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60103:
SARS-CoV-2 spike trimer (6P) in complex with two H18 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60104:
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60105:
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C1 symmetry)
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60106:
SARS-CoV-2 spike trimer (6P) in complex with three H18 Fabs, head-to-head aggregate (C3 symmetry)
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60107:
SARS-CoV-2 spike trimer (6P) in complex with two H18 and two R1-32 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60108:
SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60109:
SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs (one RBD rotated)
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60110:
SARS-CoV-2 S1 in complex with H18 and R1-32 Fab
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-60111:
Dimer of SARS-CoV-2 S1 in complex with H18 and R1-32 Fabs
Method: single particle / : Yan Q, Gao X, Liu B, Hou R, He P, Li Z, Chen Q, Wang J, He J, Chen L, Zhao J, Xiong X

EMDB-37004:
Oligonucleosome 0 DMSO
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-37005:
Oligonucleosome 9% DMSO
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-42948:
Microtubule protofilament reconstruction in CCP5:microtubule class#1 complex
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

EMDB-44544:
Microtubule protofilament reconstruction in CCP5:microtubule class#2 complex
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

EMDB-44545:
Microtubule Protofilament reconstruction in CCP5:microtubule class#3 complex
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

EMDB-43835:
Structure of biofilm-forming functional amyloid PSMa1 from Staphylococcus aureus
Method: helical / : Hansen KH, Byeon CH, Liu Q, Drace T, Boesen T, Conway JF, Andreasen M, Akbey U

EMDB-38099:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Pan M, Liu L

EMDB-38100:
Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Pan M, Liu L

EMDB-38101:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Pan M, Liu L

EMDB-38102:
Cryo-EM map of RNF168/UbcH5c-Ub/nucleosome determined by E2-Ub-NCP conjugation strategy
Method: single particle / : Ai H, Zebin T, Deng Z, Pan M, Liu L

EMDB-60397:
EcGK filament at APO state. (CASP target)
Method: single particle / : Zhang T, Leng Q, Liu LJ

PDB-8zri:
EcGK filament at APO state.
Method: single particle / : Zhang T, Leng Q, Liu LJ

EMDB-36992:
G1 dinucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36993:
G1 mononucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36994:
G1 nucleosome gyre proximal
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36998:
Metaphase dinucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-36999:
Metaphase mononucleosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-37000:
Metaphase nucleosome proximal
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-37001:
G1 preribosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-37002:
G1 ribosome cytoplasmic
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

EMDB-37003:
Metaphase ribosome
Method: subtomogram averaging / : Chen JK, Cai S, Liu T, Ruan W, Ng CT, Shi J, Surana U, Gan L

PDB-9atw:
Structure of biofilm-forming functional amyloid PSMa1 from Staphylococcus aureus
Method: helical / : Hansen KH, Byeon CH, Liu Q, Drace T, Boesen T, Conway JF, Andreasen M, Akbey U

EMDB-36914:
Cryo-EM structure of Streptomyces coelicolor transcription initiation complex with the global transcription factor AfsR
Method: single particle / : Lin W, Shi J, Xu JC

EMDB-37515:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with antidepressant desipramine in KCl condition.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-37520:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with norepinephrine in nanodisc.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-39729:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant atomoxetine in an outward-open state at resolution of 3.4 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8wgr:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with antidepressant desipramine in KCl condition.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8wgx:
Cryo-EM structure of inward-open state human norepinephrine transporter NET bound with norepinephrine in nanodisc.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

PDB-8z1l:
Cryo-EM structure of human norepinephrine transporter NET in the presence of the antidepressant atomoxetine in an outward-open state at resolution of 3.4 angstrom.
Method: single particle / : Tan J, Xiao Y, Kong F, Lei J, Yuan Y, Yan C

EMDB-37441:
FCP tetramer in Chaetoceros gracilis
Method: single particle / : Feng Y, Li Z, Zhou C, Shen JR, Liu C, Wang W

EMDB-37442:
FCP pentamer in Chaetoceros gracilis
Method: single particle / : Feng Y, Li Z, Zhou C, Liu C, Shen JR, Wang W

PDB-8wck:
FCP tetramer in Chaetoceros gracilis
Method: single particle / : Feng Y, Li Z, Zhou C, Shen JR, Liu C, Wang W

PDB-8wcl:
FCP pentamer in Chaetoceros gracilis
Method: single particle / : Feng Y, Li Z, Zhou C, Liu C, Shen JR, Wang W

EMDB-44482:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Method: single particle / : Gorman J, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more